parpe.dataprovider.DataProvider

class parpe.dataprovider.DataProvider(filename)[source]

Bases: object

Interface to HDF5 input files for parPE parameter estimation

filename

hdf5 file to access

__init__(filename)[source]

Methods Summary

__init__(filename)

apply_model_settings(model)

Apply settings to Model

apply_solver_settings(solver)

Apply settings to Solver

get_expdata_for_condition(model, condition_idx)

Get ExpData for the given simulation condition

get_opt_sim_mapping([simulation_idx])

get_starting_points([start_idx, simulation_idx])

Attributes

num_simulations

Methods

__init__(filename)[source]
apply_model_settings(model)[source]

Apply settings to Model

apply_solver_settings(solver)[source]

Apply settings to Solver

get_expdata_for_condition(model, condition_idx)[source]

Get ExpData for the given simulation condition

get_opt_sim_mapping(simulation_idx=None)[source]
get_starting_points(start_idx=None, simulation_idx=None)[source]
apply_model_settings(model)[source]

Apply settings to Model

apply_solver_settings(solver)[source]

Apply settings to Solver

get_expdata_for_condition(model, condition_idx)[source]

Get ExpData for the given simulation condition