Description of input format for misc/generateHDF5DataFileFromText.pyΒΆ
This document describes the input data for
misc/generateHDF5DataFileFromText.py
, which generates HDF5 files for
parameter estimation.
For usage of the conversion scripts, run misc/generateHDF5DataFileFromText.py
without any arguments.
Required inputs are:
the SBML model
the folder of the corresponding python-AMICI generated model
a text file with condition specific parameters
a text file the measurements to be used for model training
a text file describing optimization parameters
The SBML model and text files are expected to adhere to the PEtab format