Contents:
Contents
Classes
Enums
Functions
Typedefs
Variables
Struct AmiciSimulationRunner::AmiciResultPackageSimple
Struct AmiciSimulationRunner::AmiciWorkPackageSimple
Struct JobData
Class AmiciSimulationRunner
Class AmiciSummedGradientFunction
Class AnalyticalParameterHdf5Reader
Class AnalyticalParameterProvider
Class AnalyticalParameterProviderDefault
Class CostFunction
Class CpuTimer
Class GradientFunction
Class HDF5Exception
Class HierarchicalOptimizationProblemWrapper
Class HierarchicalOptimizationReporter
Class HierarchicalOptimizationWrapper
Template Class InverseUniqueLock
Class LearningRateUpdater
Class LinearModel
Class LinearModelMSE
Class LoadBalancerWorker
Class LocalOptimizationIpoptTNLP
Class Logger
Class MeanSquaredError
Template Class MinibatchOptimizationProblem
Template Class MinibatchOptimizer
Template Class Model
Class MultiConditionDataProvider
Class MultiConditionDataProviderDefault
Class MultiConditionDataProviderHDF5
Class MultiConditionProblem
Class MultiConditionProblemMultiStartOptimizationProblem
Class MultiStartOptimization
Class MultiStartOptimizationProblem
Class OptimizationApplication
Class OptimizationOptions
Class OptimizationProblem
Class OptimizationProblemImpl
Class OptimizationReporter
Class OptimizationResultWriter
Class Optimizer
Class OptimizerCeres
Class OptimizerDlibLineSearch
Class OptimizerFides
Class OptimizerFsqp
Class OptimizerIpOpt
Class OptimizerToms611TrustRegionSumsl
Class ParameterUpdater
Class ParameterUpdaterAdam
Class ParameterUpdaterAdamClassic
Class ParameterUpdaterMomentum
Class ParameterUpdaterRmsProp
Class ParameterUpdaterVanilla
Class ParPEException
Class SimulationResultWriter
Class StandaloneSimulator
Template Class SummedGradientFunction
Template Class SummedGradientFunctionGradientFunctionAdapter
Class WallTimer
Enum ErrorModel
Enum FunctionEvaluationStatus
Enum interceptType
Enum learningRateInterp
Enum loglevel_tag
Enum minibatchExitStatus
Enum optimizerName
Function parpe::almostEqual
Function parpe::applyChainRule
Function parpe::applyOptimalOffset
Function parpe::applyOptimalScaling
Function parpe::checkGradientForAnalyticalParameters
Template Function parpe::clipToBounds
Function parpe::computeAnalyticalOffsets
Function parpe::computeAnalyticalScalings
Function parpe::computeAnalyticalSigmas
Function parpe::computeNegLogLikelihood(std::vector<std::vector<double>> const&, std::vector<std::vector<double>> const&, const std::vector<std::vector<double>>&)
Function parpe::computeNegLogLikelihood(std::vector<double> const&, std::vector<double> const&, const std::vector<double>&)
Function parpe::error
Function parpe::fillArrayRandomDoubleIndividualInterval
Function parpe::fillArrayRandomDoubleSameInterval
Function parpe::fillFilteredParams
Function parpe::finalizeMpiIfNeeded
Function parpe::getBacktrace
Template Function parpe::getBatches
Function parpe::getDefaultOffsetParameter
Function parpe::getDefaultScalingFactor
Function parpe::getFinalParameters
Function parpe::getFunctionEvaluationWithMinimalCost
Function parpe::getLocalOptimum
Function parpe::getLocalOptimumThreadWrapper
Template Function parpe::getMinibatchOptimizer
Function parpe::getModelOutputsAndSigmas
Function parpe::getMpiActive
Function parpe::getMpiCommSize
Function parpe::getMpiRank
Function parpe::getNumStarts
Function parpe::getOuterParameters
Function parpe::getParameterTrajectory
Function parpe::getScalarProduct
Function parpe::getVectorDifference
Function parpe::getVectorNorm
Function parpe::hdf5AttributeExists
Function parpe::hdf5CreateExtendableDouble2DArray
Function parpe::hdf5CreateExtendableDouble3DArray
Function parpe::hdf5CreateExtendableInt2DArray
Function parpe::hdf5CreateExtendableString1DArray
Function parpe::hdf5CreateFile
Function parpe::hdf5CreateGroup
Function parpe::hdf5CreateOrExtendAndWriteToDouble2DArray
Function parpe::hdf5CreateOrExtendAndWriteToDouble3DArray
Function parpe::hdf5CreateOrExtendAndWriteToInt2DArray
Function parpe::hdf5CreateOrExtendAndWriteToString1DArray
Function parpe::hdf5EnsureGroupExists
Function parpe::hdf5ErrorStackWalker_cb
Function parpe::hdf5Extend2ndDimensionAndWriteToDouble2DArray
Function parpe::hdf5Extend2ndDimensionAndWriteToInt2DArray
Function parpe::hdf5Extend3rdDimensionAndWriteToDouble3DArray
Function parpe::hdf5ExtendAndWriteToString1DArray
Function parpe::hdf5Get3DDoubleHyperslab
Function parpe::hdf5GetDatasetDimensions
Function parpe::hdf5GroupExists
Function parpe::hdf5MutexGetLock
Function parpe::hdf5OpenForAppending
Function parpe::hdf5OpenForReading
Function parpe::hdf5Read1DIntegerHyperslab
Function parpe::hdf5Read1dStringDataset
Function parpe::hdf5Read2DDoubleHyperslab
Function parpe::hdf5Read2DIntegerHyperslab
Function parpe::hdf5Read3DDoubleHyperslab
Function parpe::hdf5Write1dStringDataset
Function parpe::hdf5WriteStringAttribute
Function parpe::initHDF5Mutex
Function parpe::ipOptGetLock
Function parpe::ipOptReleaseLock
Function parpe::logmessage(loglevel, std::string const&)
Function parpe::logmessage(loglevel, const char *, …)
Function parpe::logmessage(loglevel, const char *, va_list)
Function parpe::logProcessStats
Function parpe::messageHandler
Function parpe::operator==
Function parpe::optimizationProblemGradientCheck(OptimizationProblem *, int, double)
Function parpe::optimizationProblemGradientCheck(OptimizationProblem *, gsl::span<const int>, double)
Function parpe::optimizationProblemGradientCheckMultiEps(OptimizationProblem *, int)
Function parpe::optimizationProblemGradientCheckMultiEps(OptimizationProblem *, gsl::span<const int>, gsl::span<double>)
Function parpe::optimizerFactory
Function parpe::printAvailableOptimizers
Function parpe::printBacktrace
Function parpe::printDebugInfoAndWait
Function parpe::printfToString
Function parpe::printMPIInfo
Function parpe::randDouble
Template Function parpe::removeInnerParameters
Function parpe::runAlongTrajectory
Function parpe::runAndLogSimulation
Function parpe::runFinalParameters
Function parpe::runInParallelAndWaitForFinish
Function parpe::runMinibatchOptimization
Function parpe::runSimulator
Function parpe::saveSimulation
Function parpe::saveTotalCpuTime
Function parpe::setIpOptOption
Function parpe::setMinibatchOption
Function parpe::spliceParameters
Function parpe::strFormatCurrentLocaltime
Function parpe::swap
Function parpe::warning
Template Function parpe::withinBounds
Typedef parpe::LoadBalancerMaster
Typedef parpe::LoadBalancerWorker
Typedef parpe::loglevel
Typedef parpe::mutexHdfType
Typedef parpe::mutexIpOptType
Variable parpe::ANSI_COLOR_BLUE
Variable parpe::ANSI_COLOR_CYAN
Variable parpe::ANSI_COLOR_GREEN
Variable parpe::ANSI_COLOR_MAGENTA
Variable parpe::ANSI_COLOR_RED
Variable parpe::ANSI_COLOR_RESET
Variable parpe::ANSI_COLOR_YELLOW
Variable parpe::minimumLogLevel
Variable parpe::mutexIpOpt