Namespace parpe

Namespaces

• Namespace parpe::dataprovider

• Namespace parpe::hdf5

• Namespace parpe::hdf5_pe_input

• Namespace parpe::hierarchical_optimization

• Namespace parpe::loadleveler

• Namespace parpe::misc

• Namespace parpe::patch

• Namespace parpe::petab

• Namespace parpe::plotting

Classes

• Struct sumslUserData

• Class FsqpProblem

• Class MyCeresFirstOrderFunction

• Class MyIterationCallback

Enums

• Enum informExitStatus

• Enum iprintPrintLevel

• Enum toms611intOptionsIndices

• Enum toms611realOptionsIndices

Functions

• Function parpe::almostEqual

• Function parpe::applyChainRule

• Function parpe::applyOptimalOffset

• Function parpe::applyOptimalScaling

• Function parpe::calcf

• Function parpe::calcg

• Function parpe::checkGradientForAnalyticalParameters

• Function parpe::closeHDF5File

• Function parpe::computeAnalyticalOffsets

• Function parpe::computeAnalyticalScalings

• Function parpe::computeAnalyticalSigmas

• Function parpe::computeNegLogLikelihood(std::vector<std::vector<double>> const&, std::vector<std::vector<double>> const&, std::vector<std::vector<double>> const&)

• Function parpe::computeNegLogLikelihood(std::vector<double> const&, std::vector<double> const&, std::vector<double> const&)

• Function parpe::constr

• Function parpe::createDirectoryIfNotExists

• Function parpe::dlibColumnVectorFromDoubleArray

• Function parpe::error

• Function parpe::fileExists

• Function parpe::fillArrayRandomDoubleIndividualInterval

• Function parpe::fillArrayRandomDoubleSameInterval

• Function parpe::fillFilteredParams

• Function parpe::finalizeMpiIfNeeded

• Function parpe::fsqpGetLock

• Function parpe::fsqpReleaseLock

• Function parpe::getBacktrace

• Function parpe::getCeresOptions

• Function parpe::getDefaultOffsetParameter

• Function parpe::getDefaultScalingFactor

• Function parpe::getFinalParameters

• Function parpe::getFunctionEvaluationWithMinimalCost

• Function parpe::getLocalOptimum

• Function parpe::getLocalOptimumThreadWrapper

• Function parpe::getModelOutputsAndSigmas

• Function parpe::getMpiActive

• Function parpe::getMpiCommSize

• Function parpe::getMpiRank

• Function parpe::getNumStarts

• Function parpe::getNwff

• Function parpe::getNwgrf

• Function parpe::getOuterParameters

• Function parpe::getParameterTrajectory

• Function parpe::getProblemFromFj

• Function parpe::getProblemFromGradFj

• Function parpe::getScalarProduct

• Function parpe::getVectorDifference

• Function parpe::getVectorNorm

• Function parpe::gradcn

• Function parpe::gradob

• Function parpe::hdf5AttributeExists

• Function parpe::hdf5CreateExtendableDouble2DArray

• Function parpe::hdf5CreateExtendableDouble3DArray

• Function parpe::hdf5CreateExtendableInt2DArray

• Function parpe::hdf5CreateExtendableString1DArray

• Function parpe::hdf5CreateFile(const char *, bool)

• Function parpe::hdf5CreateFile(const std::string&, bool)

• Function parpe::hdf5CreateGroup

• Function parpe::hdf5CreateOrExtendAndWriteToDouble2DArray

• Function parpe::hdf5CreateOrExtendAndWriteToDouble3DArray

• Function parpe::hdf5CreateOrExtendAndWriteToInt2DArray

• Function parpe::hdf5CreateOrExtendAndWriteToString1DArray

• Function parpe::hdf5DatasetExists(hid_t, const char *)

• Function parpe::hdf5DatasetExists(hid_t, const std::string&)

• Function parpe::hdf5DatasetExists(const H5::H5File&, const std::string&)

• Function parpe::hdf5EnsureGroupExists(hid_t, const char *)

• Function parpe::hdf5EnsureGroupExists(hid_t, std::string const&)

• Function parpe::hdf5EnsureGroupExists(const H5::H5File&, const std::string&)

• Function parpe::hdf5ErrorStackWalker_cb

• Function parpe::hdf5Extend2ndDimensionAndWriteToDouble2DArray

• Function parpe::hdf5Extend2ndDimensionAndWriteToInt2DArray

• Function parpe::hdf5Extend3rdDimensionAndWriteToDouble3DArray

• Function parpe::hdf5ExtendAndWriteToString1DArray

• Function parpe::hdf5Get3DDoubleHyperslab

• Function parpe::hdf5GetDatasetDimensions

• Function parpe::hdf5GroupExists(hid_t, const char *)

• Function parpe::hdf5GroupExists(const H5::H5File&, const std::string&)

• Function parpe::hdf5MutexGetLock

• Function parpe::hdf5OpenForAppending

• Function parpe::hdf5OpenForReading

• Function parpe::hdf5Read1DIntegerHyperslab

• Function parpe::hdf5Read1dStringDataset

• Function parpe::hdf5Read2DDoubleHyperslab

• Function parpe::hdf5Read2DIntegerHyperslab

• Function parpe::hdf5Read3DDoubleHyperslab

• Function parpe::hdf5Write1dStringDataset

• Function parpe::hdf5WriteStringAttribute

• Function parpe::initHDF5Mutex

• Function parpe::ipOptGetLock

• Function parpe::ipOptReleaseLock

• Function parpe::logmessage(loglevel, const char *, …)

• Function parpe::logmessage(loglevel, const char *, va_list)

• Function parpe::logmessage(loglevel, const std::string&)

• Function parpe::logProcessStats

• Function parpe::messageHandler

• Function parpe::mkpath

• Function parpe::mkpathConstChar

• Function parpe::obj

• Function parpe::operator==

• Function parpe::optimizationOptionsFromAttribute

• Function parpe::optimizationProblemGradientCheck(OptimizationProblem *, int, double)

• Function parpe::optimizationProblemGradientCheck(OptimizationProblem *, gsl::span<const int>, double)

• Function parpe::optimizerFactory

• Function parpe::printAvailableOptimizers

• Function parpe::printBacktrace

• Function parpe::printDebugInfoAndWait

• Function parpe::printfToString

• Function parpe::printlogmessage

• Function parpe::printMPIInfo

• Function parpe::printSimulationResult

• Function parpe::randDouble

• Function parpe::runAlongTrajectory

• Function parpe::runAndLogSimulation

• Function parpe::runFinalParameters

• Function parpe::runInParallelAndWaitForFinish

• Function parpe::runMinibatchOptimization

• Function parpe::runNominalParameters

• Function parpe::runSimulationTasks

• Function parpe::runSimulator

• Function parpe::saveSimulation

• Function parpe::saveTotalCpuTime

• Function parpe::setCeresOption

• Function parpe::setIpOptOption

• Function parpe::setIpOptOptions

• Function parpe::setMinibatchOption

• Function parpe::setToms611Option

• Function parpe::signalHandler

• Function parpe::spliceParameters

• Function parpe::strFormatCurrentLocaltime

• Function parpe::swap

• Function parpe::warning

Typedefs

• Typedef parpe::column_vector

• Typedef parpe::general_matrix

• Typedef parpe::mutexFsqpType

Variables

• Variable parpe::act

• Variable parpe::dblOpts

• Variable parpe::intOpts

• Variable parpe::loglevelShortStr

• Variable parpe::minimumLogLevel

• Variable parpe::mutexFsqp

• Variable parpe::mutexHdf

• Variable parpe::oldact

• Variable parpe::strOpts