ExamplesΒΆ
The following examples demonstrate some functionalities and usage patterns of parPE.
parPE
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Contents:
- About parPE
- Usage
- Examples
- Parameter estimation for PEtab/SBML models using parPE
- Running parameter optimization for an AMICI model using
parpe::OptimizationApplication - Running AMICI simulations for parameters from an optimization result file using
main_simulator.cpp - Using parPE with charliecloud
- Using parPE with Snakemake
- HDF5 data file structure
- Mini-batch optimization with parPE
- parPE C++ API
- Python package
- FAQ